Jessica Nordlund
Researcher at Institutionen för medicinska vetenskaper; Molekylär precisionsmedicin
- Mobile phone:
- +46 70 425 08 06
- E-mail:
- Jessica.Nordlund@medsci.uu.se
- Visiting address:
- BMC, D11:2, Husargatan 3
752 37 Uppsala - Postal address:
- Molekylär Medicin, Box 1432, BMC
751 44 Uppsala
Researcher at Institutionen för medicinska vetenskaper; SNP&SEQ-teknologiplattformen
- Mobile phone:
- +46 70 425 08 06
- E-mail:
- Jessica.Nordlund@medsci.uu.se
- Visiting address:
- BMC, Husargatan 3
752 37 Uppsala - Postal address:
- Molekylär Medicin, Box 1432, BMC
751 44 Uppsala
- ORCID:
- 0000-0001-8699-9959
More information is available to staff who log in.
Keywords
- acute lymphoblastic leukemia
- acute myeloid leukemia
- cancer genomics
- epigenetics
- single cell biology
- transcriptomics
Publications
Selection of publications
- Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing (2021)
- The SEQC2 epigenomics quality control (EpiQC) study (2021)
- Refined detection and phasing of structural aberrations in pediatric acute lymphoblastic leukemia by linked-read whole-genome sequencing (2020)
- Epigenetics in pediatric acute lymphoblastic leukemia (2018)
- SPlinted Ligation Adapter Tagging (SPLAT), a novel library preparation method for whole genome bisulphite sequencing (2017)
- Genome-wide signatures of differential DNA methylation in pediatric acute lymphoblastic leukemia (2013)
Recent publications
- Comparison of high-throughput single-cell RNA-seq methods for ex vivo drug screening (2024)
- Refining risk prediction in pediatric acute lymphoblastic leukemia through DNA methylation profiling (2024)
- Next generation pan-cancer blood proteome profiling using proximity extension assay (2023)
- Increased MYB alternative promoter usage is associated with relapse in acute lymphoblastic leukemia (2023)
- Long-read whole-genome analysis of human single cells (2023)
All publications
Articles
- Comparison of high-throughput single-cell RNA-seq methods for ex vivo drug screening (2024)
- Refining risk prediction in pediatric acute lymphoblastic leukemia through DNA methylation profiling (2024)
- Next generation pan-cancer blood proteome profiling using proximity extension assay (2023)
- Increased MYB alternative promoter usage is associated with relapse in acute lymphoblastic leukemia (2023)
- Long-read whole-genome analysis of human single cells (2023)
- Multimodal classification of molecular subtypes in pediatric acute lymphoblastic leukemia (2023)
- Genomic, transcriptomic and epigenomic sequencing data of the B-cell leukemia cell line REH (2023)
- Quartet DNA reference materials and datasets for comprehensively evaluating germline variant calling performance (2023)
- Feasibility to use whole-genome sequencing as a sole diagnostic method to detect genomic aberrations in pediatric B-cell acute lymphoblastic leukemia (2023)
- Single-cell transcriptomics delineates the immune cell landscape in equine lower airways and reveals upregulation of FKBP5 in horses with asthma. (2023)
- A Study Protocol for Validation and Implementation of Whole-Genome and -Transcriptome Sequencing as a Comprehensive Precision Diagnostic Test in Acute Leukemias (2022)
- Exome-wide association study to identify rare variants influencing COVID-19 outcomes (2022)
- Common, low-frequency, rare, and ultra-rare coding variants contribute to COVID-19 severity (2022)
- Next Generation Plasma Proteomics Identifies High-Precision Biomarker Candidates for Ovarian Cancer. (2022)
- Tackling the translational challenges of multi-omics research in the realm of European personalised medicine (2022)
- scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation (2022)
- Transcriptome sequencing of archived lymphoma specimens is feasible and clinically relevant using exome capture technology (2022)
- RAG1 co-expression signature identifies ETV6-RUNX1-like B-cell precursor acute lymphoblastic leukemia in children (2021)
- Immune cells lacking Y chromosome show dysregulation of autosomal gene expression (2021)
- Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing (2021)
- The SEQC2 epigenomics quality control (EpiQC) study (2021)
- DNA Methylation Signatures Predict Cytogenetic Subtype and Outcome in Pediatric Acute Myeloid Leukemia (AML) (2021)
- Leukocytes with chromosome Y loss have reduced abundance of the cell surface immunoprotein CD99 (2021)
- Expression of BCL6 in paediatric B-cell acute lymphoblastic leukaemia and association with prognosis (2021)
- Mutational patterns and clonal evolution from diagnosis to relapse in pediatric acute lymphoblastic leukemia (2021)
- Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing (2021)
- Whole genome and exome sequencing reference datasets from a multi-center and cross-platform benchmark study (2021)
- Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion (2020)
- The proliferative history shapes the DNA methylome of B-cell tumors and predicts clinical outcome (2020)
- Clinicopathological features and prognostic value of SOX11 in childhood acute lymphoblastic leukemia (2020)
- Overexpression of chromatin remodeling and tyrosine kinase genes in iAMP21-positive acute lymphoblastic leukemia (2020)
- Chapter Eleven (2020)
- Refined detection and phasing of structural aberrations in pediatric acute lymphoblastic leukemia by linked-read whole-genome sequencing (2020)
- Association of aberrant ASNS imprinting with asparaginase sensitivity and chromosomal abnormality in childhood BCP-ALL (2020)
- CD99 expression is strongly associated with clinical outcome in children with B-cell precursor acute lymphoblastic leukaemia (2019)
- Computational and Statistical Analysis of Array-Based DNA Methylation Data (2019)
- Transcriptome and Proteome Profiling of Neural Induced Pluripotent Stem Cells from Individuals with Down Syndrome Disclose Dynamic Dysregulations of Key Pathways and Cellular Functions (2019)
- De Novo Assembly of Two Swedish Genomes Reveals Missing Segments from the Human GRCh38 Reference and Improves Variant Calling of Population-Scale Sequencing Data (2018)
- DNA methylation holds prognostic information in relapsed precursor B-cell acute lymphoblastic leukemia (2018)
- Epigenetics in pediatric acute lymphoblastic leukemia (2018)
- Data quality of whole genome bisulfite sequencing on Illumina platforms (2018)
- DNA methylation profiling of pediatric B-cell lymphoblastic leukemia with KMT2A rearrangement identifies hypomethylation at enhancer sites (2017)
- CD27 expression and its association with clinical outcome in children and adults with pro-B acute lymphoblastic leukemia (2017)
- Transcriptome sequencing in pediatric acute lymphoblastic leukemia identifies fusion genes associated with distinct DNA methylation profiles (2017)
- SPlinted Ligation Adapter Tagging (SPLAT), a novel library preparation method for whole genome bisulphite sequencing (2017)
- Genome-wide DNA methylation analysis in multiple tissues in primary Sjögren's syndrome reveals regulatory effects at interferon-induced genes (2016)
- Deep targeted sequencing in pediatric acute lymphoblastic leukemia unveils distinct mutational patterns between genetic subtypes and novel relapse-associated genes (2016)
- PAX5-ESRRB is a recurrent fusion gene in B-cell precursor pediatric acute lymphoblastic leukemia (2016)
- CopyNumber450kCancer (2016)
- DNA methylome analysis of acute lymphoblastic leukemia cells reveals stochastic de novo DNA methylation in CpG islands (2016)
- Hypomethylation in Enhancer and Promoter Regions of Interferon Regulated Genes in Multiple Tissues Is Associated with Primary Sjogren's Syndrome (2015)
- The Mutational Landscape in Pediatric Acute Lymphoblastic Leukemia Deciphered by Whole Genome Sequencing (2015)
- DNA methylation-based subtype prediction for pediatric acute lymphoblastic leukemia (2015)
- The clinical impact of IKZF1 deletions in paediatric B-cell precursor acute lymphoblastic leukaemia is independent of minimal residual disease stratification in Nordic Society for Paediatric Haematology and Oncology treatment protocols used between 1992 and 2013 (2015)
- Genome-Wide DNA Methylation Analysis of CD19+B Cells in Primary Sjogren's Syndrome (2014)
- Prognostic Impact of IKZF1 Deletions in Pediatric B-Cell Precursor Acute Lymphoblastic Leukemia Treated According to Nopho Protocols - the Swedish Experience (2014)
- Bioinformatic description of immunotherapy targets for pediatric T-cell leukemia and the impact of normal gene sets used for comparison (2014)
- Accurate detection of subclonal single nucleotide variants in whole genome amplified and pooled cancer samples using HaloPlex target enrichment (2013)
- Genome-wide signatures of differential DNA methylation in pediatric acute lymphoblastic leukemia (2013)
- The DNA Methylation Landscape of Paediatric Acute Lymphoblastic Leukemia (2012)
- Digital gene expression profiling of primary acute lymphoblastic leukemia cells (2012)
- DNA Methylation Analysis of Bone Marrow Cells at Diagnosis of Acute Lymphoblastic Leukemia and at Remission (2012)
- DNA methylation for subtype classification and prediction of treatment outcome in patients with childhood acute lymphoblastic leukemia (2010)
- Allele-specific gene expression patterns in primary leukemic cells reveal regulation of gene expression by CpG site methylation (2009)
- Identification of somatic single nucleotide variants inleukemia by targeted sequencing of non-indexed overlapping pools
- DNA methylation classification in combination with RNA-sequencing for subtype discovery in pediatric B-cell precursor acute lymphoblastic leukemia
- Refined detection and phasing of structural aberrations in pediatric acute lymphoblastic leukemia with linked-read whole genome sequencing
Books
